yeah

Makefile.const

@@ -3,7 +3,7 @@ CXXFLAGS+= -Wall -std=c++14
 CXXFLAGS+= -g
 CXXFLAGS+= -O2
 #CXXFLAGS+= -pg -fPIC
-CXXFLAGS+= -fPIC
+CXXFLAGS+= -fPIC -pthread
 
 %.o : %.cpp %.h
 	$(CXX) $(CXXFLAGS) -c $< -o $@

src/Genetics/Except.h

@@ -0,0 +1,19 @@
+#ifndef _GENETICS_EXCEPT_H_
+#define _GENETICS_EXCEPT_H_
+#include <string>
+
+namespace Shin
+{
+namespace Genetics
+{
+	class Exception
+	{
+		public:
+			Exception(const std::string &s): str(s) {};
+			const char* what()const noexcept {return str.c_str();};
+		protected:
+			std::string str;
+	};
+}
+}
+#endif

src/Genetics/Generation.h

@@ -0,0 +1,79 @@
+#ifndef _GENETICS_GENERATION_H_
+#define _GENETICS_GENERATION_H_
+
+#include <vector>
+#include <float.h>
+#include <cstddef>
+
+#include "Individual.h"
+
+namespace Shin
+{
+namespace Genetics
+{
+	template <class _T>
+	class Generation
+	{
+		public:
+			/* constructors and so */
+			Generation ():individual() {}
+
+			Generation (const Generation &old):individual(old.individual) {}
+
+			Generation& operator=(const Generation &g) {individual=g.individual; return *this;}
+
+			/* generation manipulation */
+			size_t size() {return individual.size();}
+
+			_T& operator[](const size_t i) { return individual[i];}
+
+			void add(const _T &a) { individual.push_back(a);}
+
+			inline auto begin() {return individual.begin();};
+
+			inline auto end() {return individual.end();};
+
+			/* different fitness counting */
+			double absoluteFitness()
+			{
+				return 0.0;
+			}
+
+			double relativeFiness()
+			{
+				return 0.0;
+			}
+
+			double bestFitness()
+			{
+				double f=DBL_MIN;
+				for(const _T &a:individual)
+					if(f < a.getFitness())
+						f=a.getFitness();
+				return f;
+			}
+
+			double worstFitness()
+			{
+				double f=DBL_MAX;
+				for(const _T &a:individual)
+					if(f > a.getFitness())
+						f=a.getFitness();
+				return f;
+			}
+
+			double averageFitness()
+			{
+				double f=0;
+				for(const _T &a:individual)
+						f+=a.getFitness();
+				return f/individual.size();
+			}
+
+		protected:
+			std::vector<_T> individual;
+	};
+}
+}
+
+#endif

src/Genetics/GenerationCreater.h

@@ -0,0 +1,94 @@
+#ifndef _GENETICS_GENCREATOR_H_
+#define _GENETICS_GENCREATOR_H_
+
+#include "Generation.h"
+#include "Individual.h"
+
+namespace Shin
+{
+namespace Genetics
+{
+	template <class _T>
+	class GenerationCreater
+	{
+		public:
+			Generation<_T> operator()(Generation<_T> &g) {return generate(g);}
+			virtual Generation<_T> generate(Generation<_T> &gen)=0;
+			virtual ~GenerationCreater() {}
+		protected:
+			unsigned maxGenerationSize=150;
+/*			static void run(GenerationCreater* r,unsigned long from, unsigned long to,unsigned long fitness, Generation *gen, Generation *s)
+				{ r->runner(from,to,fitness,gen,s); }
+			virtual void runner(unsigned long from, unsigned long to,unsigned long fitness, Generation *gen, Generation *s)=0;
+*/
+	};
+
+	template <class _T>
+	class Roulete: public GenerationCreater<_T>
+	{
+		public:
+			Generation<_T> generate(Generation<_T> &gen) override;
+		protected:
+	};
+}
+}
+
+template <class _T>
+Shin::Genetics::Generation< _T > Shin::Genetics::Roulete<_T>::generate(Shin::Genetics::Generation< _T >& gen)
+{
+	Generation<_T> newGen;
+	long fitness=0;
+	for(const _T &a:gen)
+	{
+		fitness+=a.fitness();
+	}
+	double avFitness=gen.averageFitness();
+
+	for(unsigned int i=0;i<gen.size() && i < this->maxGenerationSize*2/3;i++)
+	{
+		if(gen[i].getFitness() >= avFitness)
+		{
+			newGen.add(gen[i]);
+			if(rand()%20==0)
+			{
+				newGen.add(gen[i].combine(gen[i]));
+				newGen[newGen.size()-1].mutate();
+			}
+
+		}
+	}
+	if(fitness==0)
+		fitness++;
+	
+	while(newGen.size()< this->maxGenerationSize)
+	{
+		unsigned int x=rand()%(fitness+1);
+		unsigned int y=rand()%(fitness+1);
+		unsigned int xIndividual=0;
+		unsigned int yIndividual=0;
+
+		while( x > 0 && xIndividual < gen.size())
+		{
+			x-=gen[xIndividual].fitness();
+			if(x>0)
+				++xIndividual;
+		}
+
+		while(y>0 && yIndividual <gen.size())
+		{
+			y-=gen[yIndividual].getFitness();
+			if(y>0)
+				yIndividual++;
+		}
+		xIndividual=xIndividual%(gen.size());
+		yIndividual=yIndividual%(gen.size());
+
+		newGen.add(gen[xIndividual].combine(gen[yIndividual]));
+		if(rand()%20==0)
+			newGen[newGen.size()-1].mutate();
+	}
+	return newGen;
+}
+
+
+#endif

src/Genetics/Genetics.cpp

@@ -2,12 +2,97 @@
 
 using namespace Shin::Genetics;
 
-/*S::XXY S::Genetics::getSolution()
+/*
+Generation Roulete::generate(Generation& gen)
 {
-	while(1)
+	Generation s;
+	long fitness=0;
+
+	for (unsigned int i=0;i<gen.size();i++)
+		fitness+=abs(gen[i]->getFitness());
+	unsigned int size=150;
+
+	double avFitness=(gen.bestFitness()+gen.averageFitness())/2;
+
+	for(unsigned int i=0;i<gen.size() && i < size*2/3;i++)
 	{
-		
+		if(gen[i]->getFitness() > avFitness)
+		{
+			s.add(gen[i]);
+			if(rand()%20==0)
+			{
+				s.add(gen[i]->combine(gen[i]));
+				s[s.size()-1]->mutate();
+			}
+
+		}
 	}
+
+	size-=s.size();
+
+	if(size>gen.size())
+		size=gen.size();//+(gen.size()+1)/2;
+
+	if(fitness==0)
+		fitness++;
+
+	std::vector <std::thread *> threads;
+	if((size > 1000))
+	{
+		long step=size/4;
+		for(int i=0;i<4;i++)
+		{
+			std::cout << "f: "<< (i*step) << ", t: "<< ((i+1)*step) << "\n";
+			std::thread *a= new std::thread(run,this,i*step,i==3?(size+1):((i+1)*step+1),fitness,&gen,&s);
+//			a->join();
+//			delete a;
+			threads.push_back(a);
+		}
+
+	}else
+	{
+		this->runner(0,size+1,fitness,&gen,&s);
+//		std::thread *a= new std::thread(run,this,0,size+1,fitness,&gen,&s);
+//		threads.push_back(a);
+	}
+	for(std::thread *a:threads)
+	{
+		a->join();
+		delete a;
+	}
+
+	return s;
 }
 
+void Roulete::runner(long unsigned int from, long unsigned int to,unsigned long fitness, Generation *gen, Generation *s)
+{
+	for(int i=from;i<to;i++)
+	{
+		unsigned int x=rand()%(fitness+1);
+		unsigned int y=rand()%(fitness+1);
+		unsigned int xIndividual=0;
+		unsigned int yIndividual=0;
+		while( x > 0 && xIndividual < gen->size())
+		{
+			x-=gen->operator[](xIndividual)->getFitness();
+			if(x>0)
+				++xIndividual;
+		}
+
+		while(y>0 && yIndividual <gen->size())
+		{
+			y-=gen->operator[](yIndividual)->getFitness();
+			if(y>0)
+				yIndividual++;
+		}
+
+		xIndividual=xIndividual%(gen->size());
+		yIndividual=yIndividual%(gen->size());
+
+//		std::cout << fitness << " - " << xIndividual <<" - " << yIndividual << "\n";
+		s->add(gen->operator[](xIndividual)->combine(gen->operator[](yIndividual)));
+		if(rand()%20==0)
+			s->operator[](s->size()-1)->mutate();
+	}
+}
 */

src/Genetics/Genetics.h

@@ -1,44 +1,73 @@
 #ifndef _GENETICS_H_
 #define _GENETICS_H_
 
+#include "Generation.h"
+#include "Except.h"
+#include "GenerationCreater.h"
+
+#include <vector>
+#include <iostream>
+#include <thread>
+#include <mutex>
+
 namespace Shin
 {
 namespace Genetics
 {
-	class XXY
-	{
-		
-	};
 
-	class Entity
+/*
+
+	class Roulete: public GenerationCreater
 	{
 		public:
-			virtual void mutate()=0;
-			virtual Entity& combine(const Entity &s)=0;
-			virtual double getFitness()=0;
-		private:
-		
-	};
-
-	class Generation
-	{
-		public:
-			double absoluteFitness();
-			double relativeFiness();
-			double bestFitness();
-			double worstFitness();
-			double averageFitness();
-			unsigned long size();
+			Generation generate(Generation &gen) override;
 		protected:
-			
+			virtual void runner(unsigned long from, unsigned long to,unsigned long fitness, Generation *gen, Generation *s);
 	};
-
-	template <typename _T>
+*/
+	template <class _T, typename _C=Roulete<_T>>
 	class Genetics
 	{
 		public:
-			XXY getSolution(_T);
+			Genetics():c(*new _C()),generation(),deleteCreater(1) {}
+			Genetics(GenerationCreater<_T> *gc):c(gc),generation() {}
+			virtual ~Genetics()
+			{
+				if(deleteCreater)
+					delete &c;
+			}
+			void addIndividual (const _T &ind) { generation.add(ind); }
+			_T& getSolution(int maxGenerations,int targetFitness)
+			{
+				srand(time(NULL));
+				for(int round=0;round<maxGenerations;round++)
+				{
+					makeRound(round);
+					std::cout << "Round: " << round << " " << generation.size() << " " << generation.bestFitness()  <<" - " << generation.worstFitness() << "\n";
+					for(_T& t:generation)
+					{
+						if(t.getFitness()>=targetFitness)
+							return t;
+					}
+				}
+				double maxFitness=generation.bestFitness();
+				for(_T& t:generation)
+				{
+					if(t.getFitness()==maxFitness)
+						return t;
+				};
+				throw Exception("Error finding individual with best Fitess");
+			}
+			void makeRound(const int round)
+			{
+				if(round%500==1)
+					srand(time(NULL));
+				generation=c(generation);
+			}
 		protected:
+			GenerationCreater<_T> &c;
+			Generation<_T> generation;
+			bool deleteCreater=0;
 		private:
 	};
 

src/Genetics/Individual.cpp

@@ -0,0 +1,3 @@
+#include "Individual.h"
+
+

src/Genetics/Individual.h

@@ -0,0 +1,18 @@
+#ifndef _GENETICS_INDIVIDUAL_H
+#define _GENETICS_INDIVIDUAL_H
+
+namespace Shin
+{
+namespace Genetics
+{
+	class Individual
+	{
+		public:
+			virtual void mutate()=0;
+			virtual double getFitness() const=0;
+			inline double fitness() const {return getFitness();}
+		private:
+	};
+}
+}
+#endif // INDIVIDUAL_H

src/Genetics/Makefile

@@ -1,4 +1,4 @@
-OBJFILES=./Genetics.o
+OBJFILES=./Individual.o ./Genetics.o
 
 LIBNAME=Genetics
 
@@ -8,10 +8,10 @@ all: lib
 
 lib: $(LIBNAME).so $(LIBNAME).a
 
-$(LIBNAME).so:  $(OBJFILES)
-	$(CXX) -shared $(CXXFLAGS) $(OBJFILES) -o $(LIBNAME).so
+$(LIBNAME).so:  $(OBJFILES) ./Genetics.h ./Generation.h ./GenerationCreater.h
+	$(CXX) -shared $(CXXFLAGS) $(OBJFILES) -o $(LIBNAME).so -lpthread
 
-$(LIBNAME).a: $(OBJFILES)
+$(LIBNAME).a: $(OBJFILES) ./Genetics.h ./Generation.h ./GenerationCreater.h
 	rm -f $(LIBNAME).a  # create new library
 	ar rcv $(LIBNAME).a $(OBJFILES)
 	ranlib $(LIBNAME).a

tests/Makefile

@@ -1,7 +1,11 @@
 include ../Makefile.const
 
 LIB_DIR = ../lib
-ALL_TESTS=01 02 03
+GEN_TESTS=g-01
+#g-02
+NN_TESTS=nn-01 nn-02 nn-03
+ALL_TESTS=$(NN_TESTS) $(GEN_TESTS)
+
 LIBS=$(LIB_DIR)/Genetics.a $(LIB_DIR)/NeuronNetwork.a
 #LIBS=-lGenetics.so -lNeuronNetwork
 
@@ -9,11 +13,17 @@ CXXFLAGS += -I$(LIB_DIR)
 
 all:| lib $(ALL_TESTS);
 
+
+gen: $(GEN_TESTS)
+
 test: all
 	@for i in $(ALL_TESTS); do echo -n ./$$i; echo -n " - "; ./$$i; echo "";  done
 
-%: %.cpp $(LIBS)
-	$(CXX) $(CXXFLAGS) -o $@ $< $ $(LIBS) -lm
+g-%: g-%.cpp $(LIB_DIR)/Genetics.a
+	$(CXX) $(CXXFLAGS) -o $@ $< $ $(LIB_DIR)/Genetics.a $(LIB_DIR)/NeuronNetwork.a -lm
+
+nn-%: nn-%.cpp $(LIB_DIR)/NeuronNetwork.a
+	$(CXX) $(CXXFLAGS) -o $@ $< $ $(LIB_DIR)/NeuronNetwork.a -lm
 
 lib:
-	make -C ../
+	make -C ../

tests/g-01.cpp

@@ -0,0 +1,69 @@
+#include "../src/Genetics/Genetics.h"
+
+#include <iostream>
+class S: public Shin::Genetics::Individual
+{
+	public:
+		S(const double &a, const double &b) :Sa(a),Q(b)
+		{
+		};
+		void mutate()
+		{
+			if(rand()%2==1)
+			{
+				Sa=(Sa*(double)(80.0+(double)(rand()%61)))/100.0+(40-rand()%80);
+			}
+			if(rand()%2==1)
+			{
+				Sa=-Sa;
+			}
+			if(rand()%2==1)
+			{
+				Q=(Q*(double)(60.0+(double)(rand()%81)))/100.0+(40-rand()%80);
+			}
+			if(rand()%2==1)
+			{
+				Q=-Q;
+			}
+		};
+		S combine(S &s)
+		{
+			double a;
+			double b;
+			if( rand()%2)
+				a=s.Sa;
+			else
+				a=Sa;
+			if( rand()%2)
+				b=s.Q;
+			else
+				b=Q;
+			return S(a,b);
+		}
+
+		double getFitness() const
+		{
+			return (double)1.0/(double)(Sa);
+			//double s=abs(Sa-98545)+abs(Q+85);
+			//return Sa*100-Q*5;
+			//return 985258-s;
+			//return s < 0?0:s;
+		}
+		double Sa;
+		double Q;
+		void dump()
+		{
+			std::cout<< " Sa: " << Sa <<" Q: " << Q << " fitness: " <<getFitness() << "\n";
+		}
+		
+};
+
+int main()
+{
+	Shin::Genetics::Genetics<S> g;
+	g.addIndividual(S(1,0));
+	g.addIndividual(S(1,50));
+	g.addIndividual(S(50,50));
+	S &s=g.getSolution(10000,99999999);
+	s.dump();
+}

tests/g-02.cpp

@@ -0,0 +1,118 @@
+#include "../src/Genetics/Genetics.h"
+
+#include "../src/NeuronNetwork/Network"
+
+#include <iostream>
+
+class X: public Shin::NeuronNetwork::Problem
+{
+	public:
+		X(bool a,bool b):a(a),b(b)
+	{
+	}
+	protected:
+		std::vector<bool> representation() const
+		{
+			return std::vector<bool>({a,b});
+		}
+		bool a,b;
+};
+
+class S: public Shin::Genetics::Individual
+{
+	public:
+		S():n(2,4,1)
+		{
+		}
+		void mutate()
+		{
+			for(int i=0;i<3;i++)
+			{
+				for (int j=0;j<n[i]->size();j++)
+				{
+					if(rand()%20==1)
+					{
+						if(rand()%2==1)
+							n[i]->operator[](j)->setPotential(n[i]->operator[](j)->getPotential()-0.5);
+						else
+							n[i]->operator[](j)->setPotential(n[i]->operator[](j)->getPotential()+0.5);
+					}
+					int k;
+					if(i==0)
+						k=0;
+					else if(i==1)
+						k=2;
+					else
+						k=3;
+					for(;k>=0;--k)
+						if(rand()%20==0)
+						{
+							if(rand()%2)
+								n[i]->operator[](j)->setWeight(k,n[i]->operator[](j)->getWeight(k)-1);
+							else
+								n[i]->operator[](j)->setWeight(k,n[i]->operator[](j)->getWeight(k)+1);
+						}
+				}
+			}
+		};
+		S* SQ(S *s)
+		{
+			S * a= new S();
+			for(int i=0;i<3;i++)
+			{
+				for (int j=0;j<n[i]->size();j++)
+				{
+					Shin::NeuronNetwork::Neuron *q;
+					if(rand()%2==1)
+					{
+						q=n[i]->operator[](j);
+					}else
+					{
+						q=s->n[i]->operator[](j);
+					}
+					a->n[i]->operator[](j)->setPotential(q->getPotential());
+					
+					int k;
+					if(i==0)
+						k=0;
+					else if(i==1)
+						k=2;
+					else
+						k=3;
+					for(;k>=0;--k)
+						a->n[i]->operator[](j)->setWeight(k,q->getWeight(k));
+				}
+			}
+			return a;
+		}
+		Individual* combine(Individual *s)
+		{
+			return SQ(dynamic_cast<S*>(s));
+		}
+
+		Shin::NeuronNetwork::FeedForwardNetwork n;
+		double getFitness()
+		{
+			int a=0;
+			if(n.solve(X(1,1))[0]==0)
+				a++;
+			if(n.solve(X(1,0))[0]==1)
+				a++;
+			if(n.solve(X(0,1))[0]==1)
+				a++;
+			if(n.solve(X(0,0))[0]==0)
+				a++;
+			return a;
+		}
+		void dump()
+		{
+		}
+		
+};
+
+int main()
+{
+	Shin::Genetics::Genetics<S> g;
+	S* s=(S*)g.getSolution(99999,999999);
+	s->dump();
+}